Genome wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration
Yazarlar (6)
Prof. Dr. Musa Kavas Ondokuz Mayis Üniversitesi, Türkiye
Prof. Dr. Mehmet Cengiz BALOĞLU Kastamonu Üniversitesi, Türkiye
Elif Seda Atabay
Ondokuz Mayis Üniversitesi, Türkiye
Ondokuz Mayis Üniversitesi, Türkiye
Ummugulsum Tanman Ziplar
Çankiri Karatekin Üniversitesi, Türkiye
Çankiri Karatekin Üniversitesi, Türkiye
Prof. Dr. Hayriye Yıldız Daşgan Çukurova Üniversitesi, Türkiye
Turgay Ünver
Çankiri Karatekin Üniversitesi, Türkiye
Çankiri Karatekin Üniversitesi, Türkiye
| Makale Türü |
Özgün Makale
(SSCI, AHCI, SCI, SCI-Exp dergilerinde yayınlanan tam makale)
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| Dergi Adı | Molecular Genetics and Genomics | ||
| Dergi ISSN | 1617-4615 Wos Dergi Scopus Dergi | ||
| Dergi Tarandığı Indeksler | SCI-Expanded | ||
| Makale Dili | İngilizce | Basım Tarihi | 02-2016 |
| Kabul Tarihi | 11-07-2015 | Yayınlanma Tarihi | 21-07-2015 |
| Cilt / Sayı / Sayfa | 291 / 1 / 129–143 | DOI | 10.1007/s00438-015-1095-6 |
| Makale Linki | http://link.springer.com/10.1007/s00438-015-1095-6 | ||
| Özet |
| Members of basic helix-loop-helix (bHLH) gene family found in all eukaryotes play crucial roles in response to stress. Though, most eukaryotes carry the proteins of this family, biological functions of the most bHLH family members are not deeply evaluated in plants. In this study, we conducted a comprehensive genome-wide analysis of bHLH transcription factors in salt tolerant common bean. We identified 155 bHLH protein-encoding genes (PvbHLH) by using in silico comparative genomics tools. Based on the phylogenetic tree, PvbHLH genes were classified into 8 main groups with 21 subfamilies. Exon–intron analysis indicated that proteins belonging to same main groups exhibited a closely related gene structure. While, the PvbHLH gene family has been mainly expanded through segmental duplications, a total of 11 tandem duplication were detected. Genome-wide expression analysis of bHLH genes showed … |
| Anahtar Kelimeler |
| bHLH gene family | Phaseolus vulgaris | Salt stress response | Transcription factor |
BM Sürdürülebilir Kalkınma Amaçları
| Atıf Sayıları | |
| Web of Science | 93 |
| Scopus | 98 |
| Google Scholar | 116 |