Genome wide investigation and expression analysis of AP2 ERF gene family in salt tolerant common bean
Yazarlar (4)
Prof. Dr. Musa Kavas Ondokuz Mayis Üniversitesi, Türkiye
Prof. Dr. Aslıhan Kurt Kızıldoğan Ondokuz Mayis Üniversitesi, Türkiye
Arş. Gör. Gökhan Gökdemir Ondokuz Mayis Üniversitesi, Türkiye
Prof. Dr. Mehmet Cengiz BALOĞLU Kastamonu Üniversitesi, Türkiye
| Makale Türü | Özgün Makale (SSCI, AHCI, SCI, SCI-Exp dergilerinde yayınlanan tam makale) | ||
| Dergi Adı | Excli Journal | ||
| Dergi ISSN | 1611-2156 Wos Dergi Scopus Dergi | ||
| Dergi Tarandığı Indeksler | SCI-Expanded | ||
| Makale Dili | İngilizce | Basım Tarihi | 11-2015 |
| Cilt / Sayı / Sayfa | 14 / 1 / 1187–1206 | DOI | 10.17179/excli2015-600 |
| Makale Linki | http://www.excli.de/vol14/Kavas_27112015_proof.pdf | ||
| UAK Araştırma Alanları |
Biyoteknoloji
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| Özet |
| Apetala2-ethylene-responsive element binding factor (AP2-ERF) superfamily with common AP2-DNA binding domain have developmentally and physiologically important roles in plants. Since common bean genome project has been completed recently, it is possible to identify all of the AP2-ERF genes in the common bean genome. In this study, a comprehensive genome-wide in silico analysis identified 180 AP2-ERF superfamily genes in common bean (Phaseolus vulgaris). Based on the amino acid alignment and phylogenetic analyses, superfamily members were classified into four subfamilies: DREB (54), ERF (95), AP2 (27) and RAV (3), as well as one soloist. The physical and chemical characteristics of amino acids, interaction between AP2-ERF proteins, cis elements of promoter region of AP2-ERF genes and phylogenetic trees were predicted and analyzed. Additionally, expression levels of AP2-ERF genes … |
| Anahtar Kelimeler |
| AP2-ERF family | Interactome | miRNA | Salt resistance | Transcriptome analyses |
BM Sürdürülebilir Kalkınma Amaçları
| Atıf Sayıları | |
| Web of Science | 30 |
| Scopus | 33 |
| Google Scholar | 44 |