Determination and Characterization of Hsp70 Genes from Heat Shock Protein Family in Eucalyptus Genome
Yazarlar (1)
Prof. Dr. Yasemin ÇELİK ALTUNOĞLU Kastamonu Üniversitesi, Türkiye
| Makale Türü |
Özgün Makale
(ESCI dergilerinde yayınlanan tam makale)
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| Dergi Adı | KASTAMONU UNIVERSITY JOURNAL OF FORESTRY FACULTY | ||
| Dergi ISSN | 1303-2399 | ||
| Makale Dili | İngilizce | Basım Tarihi | 01-2016 |
| Cilt / Sayı / Sayfa | 16 / 2 / 497–509 | DOI | 10.17475/kastorman.289759 |
| Makale Linki | https://dergipark.org.tr/en/pub/kastorman/issue/27541/289759 | ||
| UAK Araştırma Alanları |
Fen Bilimleri ve Matematik
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| Özet |
| AbstractHeat shock proteins (Hsp) are critically important for cellular development and viability in many organisms. Hsp70proteins are a group of Hsps and responsible for folding of newly synthesized or misfolded proteins, prevention of theiraggregation, carriage of them along the membrane and control of regulatory protein activities. Eucalyptus (Eucalyptusgrandis) is an important plant to reach considerable knowledge about biology and evolution of perennial plants due toits evolutionary and ecological position and ability to adapt to marginal regions. Whole genome sequence of eucalyptuswas analyzed but Hsps have not been determined yet. Using bioinformatics tools, 21 Hsp70 genes (EgHsp70) weredetermined in this important plant. The highest number of EgHsp70 genes were located on the 10th chromosome (7genes) but 1st, 2nd, 4th and 11th chromosomes do not carry Hsp70 genes on them. Phylogenetic tree was constructedto determine evolutionary relationships of defined proteins. According to phylogenetic tree, EgHsp70 proteins weredivided into 5 clusters and proteins which were in the same clusters had similar exon-intron organization. Predicatedmolecular function style of eucalyptus Hsp70 proteins was binding activity and their roles in single organism processand metabolic process determined as their biological activities. They were found mostly in the inner part of the cell,organelle or cell parts and their predicated secondary structures were constructed by mostly α-helix chains and all theseproteins were acidic (pI<7). This study may be instructive for further researches and may be helpful for understandingof evolution of … |
| Anahtar Kelimeler |
| Heat shock proteins (Hsp) | Eucalyptus grandis | genome wide identification | gene ontology analysis | phylogenetic tree |
BM Sürdürülebilir Kalkınma Amaçları
| Atıf Sayıları | |
| Web of Science | 3 |
| Google Scholar | 3 |