BNB-BnNn Nano-Motor in Binding with ACC (tRNA Nucleotides as an Amino Acid Detector in Ribosome: QM/MM & Monte Carlo Studies
Yazarlar (2)
Prof. Dr. Majıd MONAJJEMI Islamic Azad University, Central Tehran Branch, İran
Dr. Öğr. Üyesi Fatemeh MOLLAAMIN Kastamonu Üniversitesi, Türkiye
Makale Türü Açık Erişim Özgün Makale (SCOPUS dergilerinde yayınlanan tam makale)
Dergi Adı Biointerface Research in Applied Chemistry
Dergi ISSN 2069-5837 Wos Dergi Scopus Dergi
Makale Dili İngilizce Basım Tarihi 06-2023
Cilt / Sayı / Sayfa 13 / 3 / – DOI 10.33263/BRIAC133.254
Özet
The electromagnetic non-bonded interactions of BNB molecule inside the BnNn (such as B12N12, B15N15, and B18N18) ring as a detector for tRNA-Amino acid conjugation has been investigated by QM/MM & Monte Carlo methods. In this study, we have shown that the BNB-BnNn systems can work as a nano rotor-stator for detecting tRNA during the tRNA-Amino-acid conjugation. We have employed the B12N12-tRNA (glu), B12N12–tRNA(phe) and B12N12-BNB-tRNA(arg) systems coupled with BN (-, 0, +) B inside the B12N12 ring (as a rotor) (n=12, 15, 18). We have shown that the tRNA as an extrinsic factor (stator) is set in the BNB-B12N12 system due to the generation of radical, anion, and cation forms of BN(-,0,+)B. We have also calculated the tRNA-BNB-B12N12 and obtained quantized transitional frequencies among the forms of radical, anionic, and cationic. The three frequencies have been yielded as νr-c) 486948.498 GHz, νa-c) 1792900.812 GHz, and νr-a) 2507076.816 GHz. It can be seen that all observed frequencies appeared in the IR and macro wave regions.
Anahtar Kelimeler
BnNn ring | Monte Carlo | ribosome | tRNA
Pdf İndir
Atıf Sayıları
Scopus 1
BNB-BnNn Nano-Motor in Binding with ACC (tRNA Nucleotides as an Amino Acid Detector in Ribosome: QM/MM & Monte Carlo Studies

Paylaş

İletişim
  • Kastamonu Üniversitesi Rektörlüğü, Kuzeykent Kampüsü, Merkez/Kastamonu
  • unis@kastamonu.edu.tr 03662801000
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